Zinc is an important nutrient for plant growth and development. Its availability is influenced by zinc solubilizing microbes (ZSMs). The effects of commonly promoted agronomic practices on the abundance of ZSMs are so far not well understood. In this study, conducted in 2019, we assessed the effects of farmyard manure (FYM) application, either sole or in combination with residue and/or inorganic fertilizer inputs, on ZSM community structure using 11 treatments in a long-term (17 years) integrated soil fertility management experiment located in Western Kenya.