Soil erosion due to accelerating runoff in various land cover types pose a serious threat to the long term sustainability of the fragile Himalayan landscape characterized by subsistence farming. Delimitation of high runoff zones, fostering soil erosion in the agricultural dominated watersheds is thus a necessity for watershed managers, NGO’s, urban planners, policy makers, and municipal administrations. The approach is practical, SWAT is a straightforward modeling system using GIS information. The BMP is also a very practical approach to mitigation of runoff accumulation on sub basin.