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Hokkaido Island is located in the cool temperate zone, and its climate conditions facilitated the formation of a variety of wetland types, the majority of them peat-forming mires. Most of these remained in a natural state until the early 20th century. However, drainage and subsequent conversion mostly to agricultural land have since destroyed more than 70% of the original wetland ecosystems. This paper (1) provides an overview of mire types, (2) reviews the development process of mires in Hokkaido during the Holocene, (3) analyzes the causes of losses of wetland areas, and (4) gives a summary of the current conservation and management status. Basic mire types that have been described in other parts of the northern hemisphere can also be recognized in Hokkaido, although there are floristic differences, and the frequency and intensity of volcanic impact and tsunamis is higher than in most other regions with abundant mire formation. Mire formation started at various points during the postglacial period; a few mountain mires in southwest Hokkaido date back to the Lateglacial, but most mountain mires formed during the mid to late Holocene. Most lowland mires developed at altitudes below 20 m and were influenced by the Jomon transgression that peaked ca. 6,000 years BP. The largest lowland mires started forming after the sea retreated, and many are not older than ca. 3,000 years. In 1996, the total number of wetlands (including peat-forming mires, freshwater marshes, and saltmarshes) greater than 1 ha was 150, with a total area of 59,881 ha. In 1928, when many wetlands were yet undeveloped, their total area was 200,642 ha. Most losses occurred between the 1950s and 1970s, when post-war development economics promoted agriculture and large-scale reclamation projects. Currently, 90.7% of mountain wetlands are public land, while 81.3% of the lowland wetlands are private or in mixed ownership. The ownership condition affects the possibilities for the protection of complete mire complexes especially in the lowlands. For effective conservation of wetland ecosystems it is necessary to include the catchment area in the planning of protected areas.